DNA-protein alignment

Gregor Hagedorn G.Hagedorn at BBA.DE
Thu Oct 21 14:16:14 CDT 1999

>     ...  To save me re-inventing the wheel does anyone have or know of a
>     utility which will
>     1.  input a protein alignment in one of the commonly-used formats
>         (eg, Nexus, Fasta, Clustal),
>     2.  input the corresponding DNA sequences, along possibly with
>         leading and trailing non-coding regions and introns,
>     3.  align the second to the first.

I suggest GeneDoc (Win 95-Win NT),


which I can generally highly recommend.


Gregor Hagedorn
Inst. f. Mikrobiologie, BBA     Net: G.Hagedorn at bba.de
Koenigin-Luise-Str. 19          Tel: +49-30-8304-2220 or -2221
14195 Berlin, Germany           Fax: +49-30-8304-2203

Often wrong but never in doubt!

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