[Taxacom] base alignment

Neil Sarkar sarkar at amnh.org
Fri Aug 25 11:04:19 CDT 2006


See also:

Phillips, A.J. 2006. "Homology assessment and molecular sequence  
alignment."
J Biomed Inform. 2006 Feb;39(1):18-33.
http://www.sciencedirect.com/science? 
_ob=GatewayURL&_method=citationSearch&_uoikey=B6WHD-4HS39NK-1&_origin=SD 
EMFRASCII&_version=1&md5=34f554cfe1ce6bbc284287a37691a1b6


On 2006 Aug 25, at 11:55 EDT, Jaakko Hyvönen wrote:

> Dear John, as a suitable entry to this topic I would recommend the  
> following:
>
> Wheeler, W. C. 2005. "Alignment, Dynamic
> Homology, and Optimization." pp71-80 in
> Parsimony, Phylogeny, and Genomics. V. A. Albert
> eds. Oxford University Press, Oxford.
>
> or the older article:
>
> Phillips, A., D. Janies, and W. C. Wheeler. 2000.
> "Multiple sequence alignment in phylogenetic
> analysis." Mol. Phyl. Evol. 16:317-330.
>
> if you don´t have access to these publications
> you can download them in pdf-format from Ward
> Wheeler´s homepage
> http://research.amnh.org/scicomp/ward_wheeler.html
>
> there you will find also many other articles (and software) about  
> this topic
>
> hope this helps, all the best, jaakko
>

-- 
Indra Neil Sarkar, PhD
Bioinformatics Associate
Divisions of Invertebrate Zoology
   & Library Services
American Museum of Natural History
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New York, NY 10024 USA
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