[Taxacom] POY4 beta release
Ilya Temkin
it255 at nyu.edu
Fri Mar 30 12:05:03 CDT 2007
We are proud to announce the release of POY 4 Beta build 1724
POY is a flexible, multi-platform program for phylogenetic analysis of molecular and other
data under various optimality criteria. An essential feature of POY is that it implements the
concept of
dynamic homology allowing optimization of unaligned sequences. POY offers great flexibility
for designing heuristic search strategies and implements an array of algorithms including
swapping, tree
fusing, tree drifting, and ratcheting. As output, POY generates character diagnosis, graphical
representations of cladograms and their user-specified consensus, as well as support values,
and
implied alignments. POY provides a unified approach to co-optimizing different types of
data, such as morphological and molecular sequence data. In addition, POY can analyze
entire chromosomes
and genomes and take into account large-scale genomic events (translocations, inversions,
and duplications).
POY is a platform-independent, open-source program that is compiled for Mac OSX,
Microsoft Windows, and Linux systems. POY binaries (compiled application file) is the only
piece of software
necessary to run POY. POY runs on a variety of computers computers from laptops and
desktops to Beowulf clusters of various sizes to symmetric multiprocessing hardware.
Compressed files of POY binaries, source code, and comprehensive documentation in PDF
format are available at the American Museum of Natural History Computational Sciences POY
website:
http://research.amnh.org/scicomp/projects/poy.php
For more information see:
-POY website: http://research.amnh.org/scicomp/projects/poy.php
-POY Google NewsGroup: http://groups.google.com/group/poy4
Enjoy!
AMNH POY developer team
________
Ilya Tëmkin
American Museum of Natural History
Division of Invertebrate Zoology
79th Street at Central Park West
New York, New York 10024
USA
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