[Taxacom] BioNames update - now with phylogenies

Roderic Page r.page at bio.gla.ac.uk
Fri Jun 7 16:28:00 CDT 2013


Following last week's release of BioNames http://bionames.org I've now added phylogenies for many taxa, based on trees from Mike Sanderson's PhyLoTA project (http://phylota.net ). These are automatically assembled phylogenies based on sequences in GenBank. The interface is a bit minimalist at present, but if you have a decent, modern web browser, you should be able to browse the trees.

Apart from their intrinsic interest, these phylogenies are often useful at low levels where they highlight some cases of synonymy that taxonomic databases may be unaware of (such as GenBank itself). For example see this fiddler crab phylogeny http://bionames.org/trees/phylota/ti156509_cl8_db184

There are also lots of example of taxa in GenBank that haven't been associated with formal names (aka "dark taxa").

Feedback welcome, as always.

Regards

Rod

---------------------------------------------------------
Roderic Page
Professor of Taxonomy
Institute of Biodiversity, Animal Health and Comparative Medicine
College of Medical, Veterinary and Life Sciences
Graham Kerr Building
University of Glasgow
Glasgow G12 8QQ, UK

Email: r.page at bio.gla.ac.uk
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