[Taxacom] Important note Re: two names online published - one new species
stephen_thorpe at yahoo.co.nz
Thu Jan 28 14:24:58 CST 2016
Let us briefly recap the important points:
The Amendment was issued in order to appease an unstoppable worldwide shift to electronic publishing. The ICZN is worried that it may not survive if it doesn't change with the times and appease the majority of the taxonomic community.
So, a protocol for electronic publication of new taxon names was, rather hastily it seems, put together. Lots of authors and publishers have subsequently been diligently preregistering articles on ZooBank, etc., for the sole purpose of making the online first versions available from the date that they are published online.
Problem: The Code states that preliminary versions published online cannot be made available, but fails to define "preliminary version"! This is so despite the pleas of Commissioner Krell for clarification before the Amendment was issued! Curious ...
Several people (including John Noyes) object that unpaginated versions not yet assigned to volume/issue are preliminary versions, but many (most?) other people deny that these count as "preliminary versions". This uncertainty creates uncertainty as to the exact date that many works and new names became available (in the sense of the Code), which causes problems for citation and also determination of priority, and means that a lot of work spent on ZooBank preregistrations may in fact have been a waste of time!
The "metadata" solution represents an attempt, after the fact, to define "preliminary version" is such a way as to avoid the above problem. It does avoid the above problem, but to what extent is it actually written into the Code? Is it a plausible interpretation of the Code as written, or is it just something concocted to try to solve the problem post hoc, with no "official status"?
The upshot of all this is that despite the attempts of the ICZN to appease the wider taxonomic community, they have failed to create a workable protocol for online first publication. It only works for one very specific publishing model, and we all by now know which one!
On Fri, 29/1/16, Richard Pyle <deepreef at bishopmuseum.org> wrote:
Subject: Re: [Taxacom] Important note Re: two names online published - one new species
To: "'Laurent Raty'" <l.raty at skynet.be>, taxacom at mailman.nhm.ku.edu
Received: Friday, 29 January, 2016, 7:58 AM
with everything Laurent says below, but I don't see that
as the real problem.
believe the following scenario is not as rare as some people
would believe; and indeed may be increasingly common:
1) Journal issues a
provisional electronic edition online, and clearly indicates
it as such (no LSID)
2) A revised version,
including LSID (and properly registered with archive, etc.)
is posted online, and the correct date of publication
indicated. Pagination is from 1-20.
important error is discovered, and a revised version is
posted online, replacing the previous one, and the website
(but not the PDF) indicates that it was revised. The PDF
contains the original date, and Pagination is 1-20.
4) A paper edition is produced, which includes
the corrected error, and indicates the correct date of
publication for the paper edition. Pagination is 364-384.
Each of the above happens on a
different date, in the chronological order indicated.
Most of us would probably
agree that #1 is not published in the sense of the Code,
based on the missing LSID. Even if there was an LSID
included, we could probably all agree that Art. 9.9 applies,
and it's not published in the sense of the Code.
At the time #2 was obtainable
(on the date indicated within the work itself), it was
intended by the publisher as the "version of
record". There is no evidence in the work itself, or
on the website, that it's not the final version.
So, how do we interpret #3?
Is it the "real" version of record, retroactively
making #2 unavailable under Art 9.9? Is it a distinct
published work, establishing a new objective synonym and
homonym that we must track? Assuming both #2 and #3
include the same ZooBank LSID, which version is the LSID
"actually" associated with? Does it matter which
version is deposited in an archive? What if neither
version is ever deposited in the intended archive? What if
Or, does it
depend on the nature of the error that was corrected?
Examples could include:
- Correction of the
word "teh" to "the" in the abstract
- Addition of an accent to a character in an
- Revised or corrected map
showing the distribution of the taxon
Correct spelling of the genus name for a new species-group
- Altered spelling of the new
species-group name itself
- Addition of the
location of the collection where the type specimen is to be
- etc., etc.
Some of these have relevance to nomenclature,
some do not. Does that matter in our determination of
which edition is the "version of record" that
should be considered as part of the public and permanent
scientific record, and thereby represent the date of
availability for purposes of nomenclatural priority? Do we
need an enumeration of all possible changes that do result
in a changed "version of record"?
And what about the changed
page numbers in the paper edition? For those who don't
like the "metadata" argument, are you suggesting
that the paper edition represents a new published work (with
objective synonyms and homonyms) simply because the paper
edition is not an "exact copy" of the electronic
edition? Even if the page numbers were identical, how does
one define "exact copy" in such a way that one
physical object consisting of paper pages with ink on them
is an "exact copy" of a binary object stored on a
I'm sure we
could argue about it enough to come to some sort of
consensus on this specific example. But there are a
near-infinite number of possible examples out there, and the
scope of possible examples will probably continue to expand
in the future. Why? Because despite what some have argued,
electronic dissemination of scientific information is still
very much in its infancy. The playing field is constantly
evolving. Electronic publication began as a digital
representation of a paper work (e.g., a scanned image of the
actual printed pages). As time goes on, publishers are
increasingly exploiting the power of electronic information
and its dissemination (and rightly so). As we move closer to
a world that resembles the vision of a Semantic Web, the
parallels between the old paper-based publication world and
modern electronic means of information exchange will
evaporate to the point where they are essentially
"problem" isn't going away; it's going to
get worse. Even God Herself would be challenged to come up
with wording in a revised Code that accommodated all
completely understand why we still cling to the old notions
of "publication", where the economics of
producing multiple subtly different versions of a work
produced as thousands of copies on paper effectively ensured
that problems of the sort described above were rare
outliers. The new electronic information dissemination model
completely changes the cost-effectiveness of producing
incrementally altered versions of pseudo-static works. We
could "encourage" publishers to respect our
traditional notions of publication, but how effective will
that campaign be? And do we really want to burden the
field of taxonomy with additional handicaps? (Even if we
We are tasked with
finding a way to maintain nomenclatural stability in the
context of this rapidly changing playing field. I find it
helpful to step back and remember what, exactly,
"stability" means, and how, fundamentally, we
attempt to achieve it.
- A system of latin
words universally shared and used as labels for taxa
- A mechanism for unambiguously linking the
names to the biological world through type specimens
- A mechanism for unambiguously establishing
priority among potentially competing names (subjective
That's really the essence of nomenclatural
stability. We still need a complex series of rules to deal
with legacy names until a complete and universal registry
exists (i.e., the uber-LAN). However, if we continue to
try to force-fit the rapidly changing modes of electronic
information exchange in science into a model that was
fundamentally designed around ink-on-paper documents, these
problems will continue to dominate our time and energy.
We can probably maintain the
status quo for a few more years; but if we don't get
serious about fundamentally adjusting (and future-proofing)
our system of nomenclatural availability (and, by extension,
stability), then the "problems" we fret about now
will seem trivial compared to what's ahead.
Database Coordinator for Natural
Sciences | Associate Zoologist in Ichthyology | Dive Safety
Department of Natural Sciences,
Bishop Museum, 1525 Bernice St., Honolulu, HI 96817
Ph: (808)848-4115, Fax: (808)847-8252 email: deepreef at bishopmuseum.org
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
> Of Laurent Raty
> Sent: Thursday, January 28, 2016 3:30
> To: taxacom at mailman.nhm.ku.edu
> Subject: Re: [Taxacom] Important note Re:
two names online published - one
an "exact copy" (bit-for-bit) of a pdf file is, on
the contrary, one of
> the easiest things
to do. Just select the file in your file manager and hit
> <Ctrl>-C, <Ctrl>-V: done. Of
course, in a vanishingly small proportion of the
> cases, you may get a "mutation",
and end up with a corrupt file. However,
> this is not a real problem, as it is also
extremely easy to check that a file is an
> "exact copy" of another file,
using things like hash values / checksums.
> On the other hand,
checking whether the non-metadata portion of the
> content and layout that will be displayed
when viewing a pdf file is the same
that which will be displayed when viewing another pdf file,
> differs, is a nightmare.
(Most likely plain impossible.) If you adopt any
> concept that departs
from the "exact", bit-for-bit copy, you basically
> knowingly, never to be able to
check for the integrity of a work in pdf
> The problem (?) is that some publishers
NEVER produce pdf files that are
"exact copies". If you download twice the same
work from, say,
> http://onlinelibrary.wiley.com/ , the
two files that that you get will be "exact
> copies" of each other. But if you do
the same from, eg.,
> http://www.tandfonline.com , the files
will differ: each downloaded "copy"
> is in fact a *new* pdf file, generated on
demand by the website, with each
"tagged" in the margin with your IP and the time
of download. If "copy"
"exact copy", this method does not produces
"copies" of a single
> work at
all, it produces a unique file at each download, and nothing
> published (Art. 184.108.40.206 not
Cheers, Laurent -
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